The BLAST analysis results in BrassicaDB contain a large number of references to Arabidopsis sequences. To allow access to further information about these sequences links to the Arabidopsis Genome Resource (AGR) are generated.
Get the list of nucleotide sequence accessions (use the DNA class) and the peptide sequence accessions (use the peptide class) from AGR. Generate similar lists of accessions for the Other_Sequence and Other_Protein classes in BrassicaDB.
Run the agr2brassdb.pl script using these files to generate an ace file of cross-links (note: it also generates reciprocal links for AGR) and read the ace file(s) into BrassicaDB.
Links to the Mendel gene family databases can be generated from the Other_Protein, Other_Sequence, Protein and Sequence objects.
To generate the ace file of these links just run the mendel2brassdb.pl script.
This script uses AcePerl to get the appropriate data from the databases, and generates the ace file based on matching accessions.
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Last modified: Wed Jun 19 15:18:49 MET DST |
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