Brassica BAC annotation pipeline

This is a prototype. There is no warranty on either performance or results.

Please note: all publicly available Brassica BACs have already been annotated and are available here

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A description of these following annotation options is given here

Select a local file (fasta format) for upload:

Or paste your sequence here (fasta format or raw):


Generate synteny report
Scan with Brassica IGF probes   
Scan with Brassica RFLP probes
Scan with Brassica BACends
Scan with Brassica EST assemblies Align homologous ESTs with BLAT
Scan for microsatellites (msatfinder)
Gene prediction programs: GlimmerHMM SNAP
Scan for sequence assembly gaps
Compare with annotated Arabidopsis gene models (BLAT)
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Comments and bug reports, please, to Martin Trick

Last modified: Wed Jun 27 14:14:37 BST 2012
John Innes Centre