Brassica BAC annotation pipeline

This is a prototype. There is no warranty on either performance or results.

Please note: all publicly available Brassica BACs have already been annotated and are available here

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Select a local file (fasta format) for upload:

Or paste your sequence here (fasta format or raw):

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Generate synteny report	Scan with Brassica IGF probes    Scan with Brassica RFLP probes Scan with Brassica BACends
Scan with Brassica EST assemblies	Align homologous ESTs with BLAT
Scan for microsatellites (msatfinder)
Gene prediction programs: GlimmerHMM	SNAP
Scan for sequence assembly gaps
Compare with annotated Arabidopsis gene models (BLAT)

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